I have a different problem. I can download the mod and i can go to the launcher.bat, start it, it complies a mastertextfile, then it starts FOC. BUt ususal Foc. No modded stuff at all. No GC's, no skmish, everything the same old, even if i do one of the already given GC's i start with Mon Mthma on Hoth with the usual stuff.
Nothing modded or changed at all, even if i rename my mastertextfile_English into mastertextfile_German (which is my standard language since i'm german) the game stays german(Although renaming english to german usually causes it to turn english, but solve missing errors). It stays german and there is nothing modded AT ALL.
I did exactely what you told me to, i even used exactely that tortoise thingy you said.